<description>The Kazakh and Mongolian Steppes span 5,000 kilometers west to east along the northern latitude of Asia. This unique ecozone allowed rapid movements of people, animals, goods, and ideas across Eurasia since prehistory and harbored numerous polities of pastoralists that made tremendous impacts on human history. However, the region’s dynamic genetic history has been emerging only recently from archaeogenomic studies. Choongwon Jeong of Seoul National University discusses the current understanding of the region’s genetic history, including the divergent genetic history of the Kazakh and Mongolian Steppe populations, the genetic interaction between the steppe pastoralists and their neighbors, and a comparison between the genetic history of human and domesticated animal populations. The emerging genetic view illuminates the poorly recorded history of the Kazakh and Mongolian Steppes and provides an interconnected perspective on the history of Eurasia. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41197]</description>

CARTA: Ancient DNA - New Revelations

The Kazakh and Mongolian Steppes span 5,000 kilometers west to east along the northern latitude of Asia. This unique ecozone allowed rapid movements of people, animals, goods, and ideas across Eurasia since prehistory and harbored numerous polities of pastoralists that made tremendous impacts on human history. However, the region’s dynamic genetic history has been emerging only recently from archaeogenomic studies. Choongwon Jeong of Seoul National University discusses the current understanding of the region’s genetic history, including the divergent genetic history of the Kazakh and Mongolian Steppe populations, the genetic interaction between the steppe pastoralists and their neighbors, and a comparison between the genetic history of human and domesticated animal populations. The emerging genetic view illuminates the poorly recorded history of the Kazakh and Mongolian Steppes and provides an interconnected perspective on the history of Eurasia. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41197]

CARTA: Human Population History in North and East Asia with Choongwon Jeong

<description>Humans have a deep and complex relationship with microbes. Beyond disease, microbes also profoundly shape human health and behavior through their activity in the microbiome and their diverse roles in food and cuisine. And yet we know very little about the origin, evolution, or ecology of the trillions of microorganisms that call us home. Christina Warinner of Harvard University discusses recent advances in genomic and proteomic technologies that are opening up dramatic new opportunities to investigate the complex and diverse microbial communities that have long inhabited our human bodies and our food systems - both in sickness and in health. From infectious disease to the microbiome, microbes are the invisible and often overlooked figures that have profoundly shaped human culture and influenced the course of human history. Warinner focuses on the long arc of human-microbial relationships preserved by ancient DNA over the past 100,000 years, and explores how emerging research on pathogen evolution and the recent loss of commensal microbes is changing how we understand human health – both today and in the past. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41196]</description>

Humans have a deep and complex relationship with microbes. Beyond disease, microbes also profoundly shape human health and behavior through their activity in the microbiome and their diverse roles in food and cuisine. And yet we know very little about the origin, evolution, or ecology of the trillions of microorganisms that call us home. Christina Warinner of Harvard University discusses recent advances in genomic and proteomic technologies that are opening up dramatic new opportunities to investigate the complex and diverse microbial communities that have long inhabited our human bodies and our food systems - both in sickness and in health. From infectious disease to the microbiome, microbes are the invisible and often overlooked figures that have profoundly shaped human culture and influenced the course of human history. Warinner focuses on the long arc of human-microbial relationships preserved by ancient DNA over the past 100,000 years, and explores how emerging research on pathogen evolution and the recent loss of commensal microbes is changing how we understand human health – both today and in the past. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41196]

CARTA: Human Microbiome Evolution with Christina Warinner

<description>David Gokhman of the Weizmann Institute of Science explores how changes in gene regulation shaped recent human evolution. His team used massively parallel reporter assays in skeletal and neural cells to test 71,443 genetic variants that distinguish Neanderthals and Denisovans from modern humans, building a catalog that reveals hundreds of noncoding variants that alter gene expression. The work uncovers evolutionary trends and examples of convergent evolution, including an enhancer of KDM8, a gene involved in tumor progression, that was completely silenced in both archaic and modern human lineages through different mechanisms: motif disruption in Neanderthals and Denisovans, and hypermethylation in modern humans. Gokhman also introduces a way to reconstruct anatomical profiles from DNA sequence and methylation, using it to model Denisovan anatomy and scan the fossil record. The results suggest that the Harbin and Dali fossils were likely Denisovans, while Kabwe may have been related to the ancestor of Neanderthals and Denisovans, helping to clarify the regulatory changes underlying human evolution. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41195]</description>

David Gokhman of the Weizmann Institute of Science explores how changes in gene regulation shaped recent human evolution. His team used massively parallel reporter assays in skeletal and neural cells to test 71,443 genetic variants that distinguish Neanderthals and Denisovans from modern humans, building a catalog that reveals hundreds of noncoding variants that alter gene expression. The work uncovers evolutionary trends and examples of convergent evolution, including an enhancer of KDM8, a gene involved in tumor progression, that was completely silenced in both archaic and modern human lineages through different mechanisms: motif disruption in Neanderthals and Denisovans, and hypermethylation in modern humans. Gokhman also introduces a way to reconstruct anatomical profiles from DNA sequence and methylation, using it to model Denisovan anatomy and scan the fossil record. The results suggest that the Harbin and Dali fossils were likely Denisovans, while Kabwe may have been related to the ancestor of Neanderthals and Denisovans, helping to clarify the regulatory changes underlying human evolution. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41195]

CARTA: Evolutionary Switches - How Regulatory Variants Shaped Human Evolution with David Gokhman

<description>The sequencing of genomes from archaic humans, such as Neanderthals and Denisovans, has transformed our understanding of human evolutionary history. These ancient genomes reveal that modern humans did not evolve in isolation but interbred with now-extinct groups, leaving lasting genetic legacies. To date, genomic sequences from 31 archaic human individuals, including four sequenced to high coverage, have provided unprecedented insights into the population structure, social organization, and adaptation of this now-extinct lineages, allowing us to reconstruct our own evolutionary history and the mechanisms that led to modern human success. Diyendo Massilani of Yale University School of Medicine reviews nearly three decades of research on archaic human DNA and what we have learned about how these groups lived, as well as how admixture between different lineages may have contributed both to the extinction of archaic humans and the thriving of modern humans. Ultimately, ancient genomes show that the success of our species was not predetermined but forged through encounters, exchanges, and adaptations, and that the legacies of archaic humans live on in our biology today, continuing to influence what it means to be human.   Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41193]</description>

The sequencing of genomes from archaic humans, such as Neanderthals and Denisovans, has transformed our understanding of human evolutionary history. These ancient genomes reveal that modern humans did not evolve in isolation but interbred with now-extinct groups, leaving lasting genetic legacies. To date, genomic sequences from 31 archaic human individuals, including four sequenced to high coverage, have provided unprecedented insights into the population structure, social organization, and adaptation of this now-extinct lineages, allowing us to reconstruct our own evolutionary history and the mechanisms that led to modern human success. Diyendo Massilani of Yale University School of Medicine reviews nearly three decades of research on archaic human DNA and what we have learned about how these groups lived, as well as how admixture between different lineages may have contributed both to the extinction of archaic humans and the thriving of modern humans. Ultimately, ancient genomes show that the success of our species was not predetermined but forged through encounters, exchanges, and adaptations, and that the legacies of archaic humans live on in our biology today, continuing to influence what it means to be human.   Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41193]

CARTA: Archaic Human Genomes with Diyendo Massilani

<description>The genome sequences of Neandertals and Denisovans have provided a wealth of new information about the origins, migrations, and interactions of ancient humans. These genomes have revealed that mixture between hominin groups was common: all modern humans outside Africa carry around 2% Neandertal DNA from a single major episode of Neandertal gene flow, while the ancestors of present-day Asians and Oceanians also met and mixed with multiple, genetically distinct Denisovan populations. Archaeological evidence suggests multiple dispersals of modern humans out of Africa, with early fossils identified in East and Southeast Asia over 50 thousand years ago. In contrast, genomic studies indicate that all present-day non-African populations descend primarily from a single dispersal after ~50 ka, though the migration routes of ancestral populations across Eurasia and Oceania remain unclear. Janet Kelso, professor at Max Planck Institute for Evolutionary Anthropology, shows how using the distribution of Neandertal and Denisovan ancestry in ancient and present-day modern humans can determine when, where and how often modern and archaic humans met and mixed. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41192]</description>

The genome sequences of Neandertals and Denisovans have provided a wealth of new information about the origins, migrations, and interactions of ancient humans. These genomes have revealed that mixture between hominin groups was common: all modern humans outside Africa carry around 2% Neandertal DNA from a single major episode of Neandertal gene flow, while the ancestors of present-day Asians and Oceanians also met and mixed with multiple, genetically distinct Denisovan populations. Archaeological evidence suggests multiple dispersals of modern humans out of Africa, with early fossils identified in East and Southeast Asia over 50 thousand years ago. In contrast, genomic studies indicate that all present-day non-African populations descend primarily from a single dispersal after ~50 ka, though the migration routes of ancestral populations across Eurasia and Oceania remain unclear. Janet Kelso, professor at Max Planck Institute for Evolutionary Anthropology, shows how using the distribution of Neandertal and Denisovan ancestry in ancient and present-day modern humans can determine when, where and how often modern and archaic humans met and mixed. Series: "CARTA - Center for Academic Research and Training in Anthropogeny" [Science] [Show ID: 41192]

CARTA: Archaic Introgression Reveals Human Dispersals with Janet Kelso

Multidisciplinary researchers explore the origins of humanity and the many facets of what makes us human.

CARTA - Anthropogeny (Video)

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